model: scoldatafile: data/scol/Scolytidae_28S.0.01.Nex
stem index file: data/scol/Scolytidae_HelixIndex.0.00.txt
generated with jrna version: 0.831
Totals total taxa: 107
total interleaves: 11
total blocks: 219
total bracketed blocks: 41
total unbracketed blocks: 178
total bracketed chars: 578
total unbracketed chars: 1052
total chars: 1630
longest bracketed block: 64
total blocks defined as helicies: 100
total length of defined non-helicies: 765
total five-prime strands: 50
total three-prime strands: 50
total complete helices: 50
total complete pairs in blocks defined as helices: 340
Taxa
0 - Ac1_Ips_acum_IPINI
1 - Av5_Ips_avul_IPINI
2 - Ty1_Ips_typo_IPINI
3 - Mx1_Pse_mexi_IPINI
4 - Lat3_Ort_lati_IPINI
5 - Olon1_Ort_long_IPINI
6 - Oer1_Ort_eros_IPINI
7 - Pho1_Pit_hopk_IPINI
8 - Pbs1_Pit_bist_IPINI
9 - Pir1_Pit_ikur_IPINI
10 - Akeg1_Aca_kepo_IPINI
11 - P_por1_Pit_pori_IPINI
12 - Osut1_Ort_sutu_IPINI
13 - P14_Ips_plas_IPINI
14 - Tri2_Ips_trid_IPINI
15 - Pil3_Ips_pili_IPINI
16 - Ma1_Ort_mann_IPINI
17 - Bon3_Ips_bona_IPINI
18 - Sex_Ips_sexd_IPINI
19 - Am3_Ips_amin_IPINI
20 - CoCi3_Pse_coci_IPINI
21 - Ort4_Ort_cael_IPINI
22 - Pele1_Pik_eleg_IPINI
23 - Cali_Ips_cali_IPINI
24 - Ce3_Ips_cemb_IPINI
25 - Ho5_Ips_hopp_IPINI
26 - Wo3_Ips_wood_IPINI
27 - GR1_Ips_gran_IPINI
28 - Le3_Ips_leco_IPINI
29 - Em1_Ips_emar_IPINI
30 - Porn1_Pik_orna_IPINI
31 - Knu2_Ips_knua_IPINI
32 - AF308351_Ara_mino_COSSO
33 - AF308350_Ara_majo_COSSO
34 - AF375301_Ste_sp_COSSO
35 - AF308352_Cne_leco_BOTH
36 - AF308353_Cne_sp_BOTH
37 - AF308387_Hyl_porc_HYLA
38 - AF308364_Hyp_sp_HYLA
39 - AF308367_Aln_aspe_HYLE
40 - AF308356_Hys_sp_HYLE
41 - AF308368_Hys_sp2_HYLE
42 - AF308365_Hyu_vari_HYLE
43 - AF308354_Sue_niis_HYOR
44 - AF308369_Cha_sp_HYPO
45 - AF308370_Lip_nigr_HYPO
46 - AF308362_Chr_aspe_PHLS
47 - AF308359_Chr_sp_PHLS
48 - AF308360_Psc_sp_PHLS
49 - AF308373_Pht_limi_PHLT
50 - AF308383_Den_mexi_TOMI
51 - AF308384_Den_murr_TOMI
52 - AF308385_Den_pond_TOMI
53 - AF308374_Den_pseu_TOMI
54 - AF308386_Den_tere_TOMI
55 - AF308375_Hyg_tube_TOMI
56 - AF308379_Pse_nebu_TOMI
57 - AF308377_Sin_port_TOMI
58 - AF308366_Xch_vald_TOMI
59 - AF375297_Arp_sp_CORTH
60 - AF375305_Psp_sp_PITY
61 - AF308389_Hyp_seto_CRYPH
62 - AF308388_Hyp_sp_CRYPH
63 - AF375300_Coc_dact_DRYO
64 - AF375303_Mic_cari_MICRA
65 - AF308391_Scp_sp_SCOLP
66 - AF375306_Sco_unis_SCOLY
67 - AF308392_Cto_flav_XYCTO
68 - AF308394_Try_line_XYLOT
69 - AF308395_Xyt_poli_XYLOT
70 - AF375302_Din_pseu_PLATY
71 - AF375304_Pla_sp_PLATY
72 - AF375298_Aus_inco_PLATY
73 - AF375299_Cha_mont_PLATY
74 - CRYALU_Cry_alut_CRYPT
75 - AMA_SCH1_Ama_schl_XYLEB
76 - CONO121_Con_pond_PITYO
77 - MMAL2_Mon_mali_CORTH
78 - HYLHIRL_Hyl_hirt_MICRA
79 - XPOL_Xyt_poli_XYLOT
80 - XYL_SHI_Xyl_shir_XYLEB
81 - Crowal_Cro_wall_PLATY
82 - AMBSP_Amb_sp_XYLEB
83 - CRYKES_Crp_kesi_CRYPH
84 - DSTR1_Den_stri_PITYO
85 - EUPI1_Euw_pice_XYLEB
86 - PRCL1_Pre_clav_IPINQ
87 - SC0VEN_Sco_vent_SCOLY
88 - CatR2_Cat_rhoi_CACT
89 - COR_SP_Cor_sp_CORTH
90 - SCPENU_Scp_ento_SCOLP
91 - MONSP_Mon_dent_CORTH
92 - XYCBIG_Xyc_bisp_DRYO
93 - AF308378_Psh_sp_TOMI
94 - AF308376_Hyg_anti_TOMI
95 - AF308372_Pht_pube_PHLT
96 - AF308361_Phs_punc_PHLS
97 - AF308358_Phd_sp_PHLS
98 - AF308355_Sur_celu_DIAM
99 - Didia_Dia_curv_DIAM
100 - PrxPrx_Phrix_sp_PHRIX
101 - Hy04_Hyp_ficus_HYPOB
102 - CtSct_Sco_acum_CTENO
103 - CtPyc_Pyn_hisp_CTENO
104 - CtGyn_Gym_reit_CTENO
105 - Xylo1_Pre_sexs_IPINQ
106 - Dolpum_Dol_pumi_CRYPT
Interleaves
[0] Block_1 : Core+D2 |bc|mx|cc|st|bpf|Blocks: (0..4)
[1] Block_2 : D2 |bc|mx|cc|st|bpf|Blocks: (5..32)
[2] Block_3 : D2 |bc|mx|cc|st|bpf|Blocks: (33..39)
[3] Block_4 : D2 |bc|mx|cc|st|bpf|Blocks: (40..65)
[4] Block_5 : D2 |bc|mx|cc|st|bpf|Blocks: (66..76)
[5] Block_6 : D2 |bc|mx|cc|st|bpf|Blocks: (77..105)
[6] Block_7 : D2+core |bc|mx|cc|st|bpf|Blocks: (106..133)
[7] Block_8 : D3 |bc|mx|cc|st|bpf|Blocks: (134..151)
[8] Block_9 : Core |bc|mx|cc|st|bpf|Blocks: (152..168)
[9] Block_10 : Core+D4 |bc|mx|cc|st|bpf|Blocks: (169..205)
[10] Block_11 : Core+D4 |bc|mx|cc|st|bpf|Blocks: (206..218)