model: arthdatafile: data/arth/18S_arthropods.00.02.Nex
stem index file: data/arth/18S_arthropods.SI.00.01.txt
generated with jrna version: 0.822
Totals total taxa: 175
total interleaves: 27
total blocks: 342
total bracketed blocks: 84
total unbracketed blocks: 258
total bracketed chars: 3170
total unbracketed chars: 1849
total chars: 5019
longest bracketed block: 245
total blocks defined as helicies: 148
total length of defined non-helicies: 1362
total five-prime strands: 74
total three-prime strands: 74
total complete helices: 74
total complete pairs in blocks defined as helices: 549
Taxa
0 - U49909_Milnesium_tardigradum
1 - AY210837_Peripatus_sp
2 - AF342794_Peripatoides_novaezealandiae
3 - AY210808_Callipallene_sp
4 - AF005440_Colossendeis_sp
5 - AY210831_Pandinus_imperator
6 - X13457_Aphonopelma_sp
7 - U91490_Limulus_polyphemus
8 - AY210828_Orthoporus_sp
9 - AY210812_Cormocephalus_hartmeyeri
10 - AY210822_Hanseniella_sp
11 - AY210825_Lithobius_sp
12 - AY210842_Squilla_empusa
13 - AY210805_Artemia_sp
14 - AY210813_Cyclopidae_sp
15 - XXXXXX_Daphniarna_sp
16 - U19182_Panilurus_sp
17 - AY210804_Argulus_sp
18 - AY210844_Triops_sp
19 - AY210838_Podura_aquatica
20 - AY210810_Ctenolepisma_longicaudata
21 - AY210843_Tenebrio_sp
22 - X57172_Aedes_albopictus
23 - M21017_Drosophila_melanogaster
24 - XXXXXX_Coptocycla_adamantina
25 - AY210829_Orthoporus_sp
26 - LPU91490_Limulus_polyphemus
27 - AF173236_Proteroiulus_fuscus
28 - AF436018_Pagurus_longicarpus
29 - AJ238061_Artemia_franciscana
30 - AY037172_Neanura_latior
31 - AY037171_Onychiurus_yodai
32 - AF005452_Podura_aquatica
33 - U61301_Lepidocyrtus_paradoxus
34 - Z36893_Crossodonthina_koreana
35 - X89485_Poduraaquatic
36 - X90678_Pseudachorutus_sp
37 - Z26765_Hypogastrura_dolsana
38 - AF173233_Acerentulus_traegardhi
39 - AY037170_Neocondeellum_dolichotarsum
40 - AY037169_Baculentulus_tianmushanensis
41 - AF173234_Campodea_tillyardi
42 - AY037168_Parajapyx_emeryanus
43 - AY037167_Lepidocampa_weberi
44 - AF005456_Catajapyx_sp
45 - AF005455_Campodeidae_sp_2
46 - AF005454_Campodeidae_sp
47 - X89808_Petrobius_brevistylis
48 - U65106_Trigoniopthalmus_alternatus
49 - AF370788_Allomachilis_froggart
50 - AF005457_Dilta_littoralis
51 - AF005458_Lepisma_sp
52 - AY210810_Ctenolepisma_longicaudata
53 - AF370790_Thermobia_domestica
54 - AF370789_Tricholepidion_gertschi
55 - AY338728_Tricholepidion_sp
56 - AF461244_Lestes_sponsa
57 - AJ421949_Chalcolestes_viridis
58 - AJ421948_Sympecma_fuscana
59 - AY121144_Argia_vivida
60 - AF461235_Coenagrion_sp
61 - AF461234_Coenagrion_hastulatum
62 - AF461238_Erythromma_najas
63 - AF461241_Pyrrhosoma_nymphula
64 - AF461239_Ischnura_elegans
65 - AF461237_Enallagma_cyathigerum
66 - AF461247_Epiophlebia_superstes
67 - AF461230_Aeshna_cyanea
68 - AY121143_Ophiogomphus_severus
69 - AF461232_Brachytron_pratense
70 - AF461236_Cordulia_aenea
71 - AF461242_Somatochlora_flavomaculata
72 - AF461240_Leucorrhinia_pectoral
73 - AF461245_Sympetrum_sanguineum
74 - AF461233_Celithemis_eponina
75 - U65107_Ephemerella_sp
76 - AY121137_Paraleptophlebia_sp
77 - AF461255_Anthopotamus_sp
78 - AF461250_Caenis_luctuosa
79 - X89489_Ephemera_sp
80 - AF370791_Callibaetis_ferrugine
81 - AF461248_Baetis_buceratus
82 - AF461253_Hexagenia_rigida
83 - AF461249_Cloeon_dipterum
84 - AF461254_Leucrocuta_aphrodite
85 - AF461251_Centroptilum_luteolum
86 - AF461252_Stenonema_sp
87 - AF461257_Nemoura_cinerea
88 - AF311452_Amphinemura_sulcicollis
89 - AF311447_Zelandoperla_agnetis
90 - AF461256_Isoperla_obscura
91 - AF311445_Stenoperla_maclellani
92 - MSU65110_Megarcys_stigmata
93 - AF311450_Ostrocerca_albidipennis
94 - AY121149_Plumiperla_diversa
95 - AF311460_Megaleuctra_stigmata
96 - U68400_Mesoperlina_pecircai
97 - PBZ97575_Phyllium_bioculatum
98 - X89488_Carausius_morosus
99 - X89490_Forficula_sp
100 - AY121133_Chelisoches_morio
101 - AY121132_Echinosoma_sp
102 - AY121131_Doru_spiculiferum
103 - U65114_Labidura_riparia
104 - AF370792_Periplaneta_americana
105 - AY210820_Gromphadorhina_laevigata
106 - AF220575_Polyphaga_aegyptiaca
107 - XXXXXX_Cryptocercus_sp
108 - AF220570_Cryptocercus_relictus
109 - AF423805_Tenodera_aridifolia
110 - AF246712_Kongobatha_diademata
111 - AF220578_Archimantis_latistylus
112 - AF220577_Paraoxypilus_tasmaniensis
113 - AF220576_Creobroter_pictipennis
114 - AF220568_Mastotermes_darwiniensis
115 - AF220569_Microhodotermes_viator
116 - AF220567_Hodotermopsis_japonica
117 - AF220566_Neotermes_koshunensis
118 - AF220565_Serritermes_serrifer
119 - AF220564_Coptotermes_lacteus
120 - AY121138_Grylloblatta_campodei
121 - GRZ97569_Grylloblatta_rothi
122 - AY121135_Teratembia_n_sp
123 - Z97593_Oligotoma_nigra
124 - AF423802_Diradius_vandykei
125 - Z97566_Cyphoderris_monstrosus
126 - Z97587_Tettigonia_viridissima
127 - Z97570_Hemideina_crassidens
128 - Z97565_Cylindraustralia_kochii
129 - Z97567_Euschmidtia_cruciformis
130 - Z97586_Tanaocerus_koebeli
131 - Z97560_Acrida_turrita
132 - AY037173_Oxya_chinensis
133 - Z97563_Ceuthophilus_carlsbadensis
134 - U88339_Graphosoma_lineatum
135 - U06478_Okanagana_utahensis
136 - U06480_Philaenus_spumarius
137 - U06476_Lygus_hesperus
138 - X89495_Rhaphigaster_nebulosa
139 - U42721_Thripidae_chimera
140 - U20414_Ectopsocidae_sp
141 - AY077779_Liposcelis_sp
142 - AF423793_Valenzuela_sp
143 - AY077763_Neophilopterus_incompletus
144 - AF139484_Pediculus_humanus
145 - AY077778_Haematomyzus_elephantis
146 - AY077759_Heterodoxus_calabyi
147 - AF286285_Boreus_coloradensis
148 - AF286287_Merope_tuber
149 - X89493_Panorpa_germanica
150 - X89486_Archaeopsylla_erinacei
151 - AF136863_Micropterix_calthella
152 - X89491_Galleria_mellonella
153 - AF136861_Wormaldia_moesta
154 - AF286292_Pycnopsyche_lepida
155 - X89497_Sialis_sp
156 - X89494_Phaeostigma_notata
157 - AF002809_Dynastes_granti
158 - AF201421_Distocupes_sp
159 - X89496_Tipula_sp
160 - AF073889_Chrysops_niger
161 - X77785_Polistes_dominulus
162 - AB064266_Athalia_rosae
163 - X89441_Mengenilla_chobauti
164 - X77784_Xenos_vesparum
165 - U65159_Triozocera_mexicana
166 - U65163_Crawfordia_sp
167 - U65161_Caenocholax_fenyesi
168 - U65160_Caenocholax_fenyesi
169 - X74763_Xenos_vesparum
170 - U65164_Xenos_pecki
171 - X89440_Stylops_melittae
172 - AF423800_Mengenilla_chobauti
173 - U65162_Elenchus_japonica
174 - XXXXXX_Caenocholax_fenyesi_texensis
Interleaves
[0] Block_1 : 18S_Domain_1+V1 |bc|mx|cc|st|bpf|Blocks: (0..20)
[1] Block_2 : 18S_Domain_1+V2 |bc|mx|cc|st|bpf|Blocks: (21..33)
[2] Block_3 : 18S_Domain_1+V2 |bc|mx|cc|st|bpf|Blocks: (34..42)
[3] Block_4 : 18S_Domain_1+V2 |bc|mx|cc|st|bpf|Blocks: (43..47)
[4] Block_5 : 18S_Doamin_1+V2 |bc|mx|cc|st|bpf|Blocks: (48..66)
[5] Block_6 : 18S_Domain_1+V3 |bc|mx|cc|st|bpf|Blocks: (67..98)
[6] Block_7 : 18S_Domain_2 |bc|mx|cc|st|bpf|Blocks: (99..108)
[7] Block_8 : 18S_Domain_2_V4 |bc|mx|cc|st|bpf|Blocks: (109..128)
[8] Block_9 : 18S_Domain_2_V4 |bc|mx|cc|st|bpf|Blocks: (129..134)
[9] Block_10 : 18S_Domain_2_V4_D |bc|mx|cc|st|bpf|Blocks: (135..136)
[10] Block_11 : 18S_Domain_2_V4_D |bc|mx|cc|st|bpf|Blocks: (137)
[11] Block_12 : 18S_Domain_2_V4_E |bc|mx|cc|st|bpf|Blocks: (138)
[12] Block_13 : 18S_Domain_2_V4-E |bc|mx|cc|st|bpf|Blocks: (139..143)
[13] Block_14 : 18S_Domain_2_V4_S |bc|mx|cc|st|bpf|Blocks: (144..147)
[14] Block_15 : 18S_Domain_2_V4_E |bc|mx|cc|st|bpf|Blocks: (148..182)
[15] Block_16 : 18S_Domain_2_V4_C |bc|mx|cc|st|bpf|Blocks: (183)
[16] Block_17 : 18S_Domain_2_V4_C |bc|mx|cc|st|bpf|Blocks: (184)
[17] Block_18 : 18S_Domain_2_V4+D |bc|mx|cc|st|bpf|Blocks: (185..206)
[18] Block_19 : 18S_Domain_V5 |bc|mx|cc|st|bpf|Blocks: (207..233)
[19] Block_20 : 18S_Domain_3_V6 |bc|mx|cc|st|bpf|Blocks: (234..263)
[20] Block_21 : 18S_Domain_3_V7 |bc|mx|cc|st|bpf|Blocks: (264..270)
[21] Block_22 : 18S_Domain_3_V7 |bc|mx|cc|st|bpf|Blocks: (271..272)
[22] Block_23 : 18S_Domain_3_V7 |bc|mx|cc|st|bpf|Blocks: (273..275)
[23] Block_24 : 18S_V7+Domain_3 |bc|mx|cc|st|bpf|Blocks: (276..290)
[24] Block_25 : 18S_Domain_3_V8 |bc|mx|cc|st|bpf|Blocks: (291..317)
[25] Block_26 : 18S_Domain_3 |bc|mx|cc|st|bpf|Blocks: (318..329)
[26] Block_27 : 18S_Domain_3_V9 |bc|mx|cc|st|bpf|Blocks: (330..341)